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What To Know If You’re a 1099 Independent Contractor

By James M. Dahle, MD, FACEP | on August 13, 2024 | 3 Comments
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Question

My new employer wants to make me a “1099.” What do I need to know as I transition away from being a true employee?

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ACEP Now: Vol 43 – No 08 – August 2024

Answer

First, let’s make sure we understand the terminology. Emergency physicians are typically “paid on” one of three types of tax forms: W-2, K-1, or 1099. Those who receive a W-2 at the end of the year are employees, those paid on a K-1 are partners, and those paid on a 1099 are independent contractors. Thus, there is no such thing as a “1099 employee.” If you’re given a 1099 at the end of the year, you’re not an employee; you’re in business for yourself. You’re self-employed. You are the employer and your business contracts with the hospital or other business for your personal services. As the employer, you are now responsible for things your employer would have provided if you were an employee.

The first question a self-employed physician should ask themselves is what kind of business structure they should use. The simplest is “sole proprietorship,” which is what you have if you don’t deliberately form something else. While best practice is to get an Employer Identification Number (EIN), which can be obtained online in 30 seconds for free here, you are allowed to just use your Social Security number when you fill out a W-9 for the “employer.” Some emergency physicians consider forming a limited liability company (LLC) or a corporation, thinking this will somehow reduce their malpractice risk. In reality, malpractice is always personal, and a business shell won’t protect you. The main reason some physicians form an LLC or, more rarely, a corporation is to make an “S election” and designate some of their earnings as “distributions” rather than salary to save some money on Medicare taxes. The additional hassle and expense must be weighed against the tax savings. For the most part, your business expense deductions are the same with any type of structure.

Perhaps the biggest change for a physician “going 1099” is the need to withhold and pay your own taxes. Employers are required to withhold a certain amount in federal, payroll, and sometimes state taxes from your paycheck and send that money to the government on your behalf. Without an employer, you are now responsible for doing this. The way it is done by sole proprietorships is to send in a check with IRS Form 1040-ES (or pay online at https://www.eftps.gov/) with “quarterly estimated payments” on April 15, June 15, September 15, and January 15 for the previous quarter. Note that there are only two months between April 15 and June 15. The biggest financial error a new independent contractor can make is to not set money aside to pay this tax bill each quarter. A typical emergency physician will likely find this amount to be between 20 and 30 percent of their income, although it may be higher or lower. Calculating this amount is challenging and often involves a little guess work. If you underpay by a little, there will be a penalty when you file your taxes on April 15, but it isn’t too bad. It is essentially equal to the interest the money you should have paid to the government earned in the meantime in a money market fund.

A more significant tax change is that you now must pay both halves of the payroll taxes, Social Security and Medicare. Typically, an employer and an employee split this cost equally; however, as an independent contractor, you are the employer AND the employee and are now responsible for both.

Independent contractors are also responsible for all of their own benefits, with the frequent exception of malpractice insurance. Thus, you will now be choosing and funding your own retirement accounts, paying for your own health insurance, and taking care of your own licensing, credentialing, and continuing medical education (CME) costs. With the additional cost of benefits and payroll taxes, an independent contractor should be paid significantly more than an employee doing the same job. For a typical emergency physician, about 10 percent more is a good rule of thumb, but it is best to calculate the exact difference when comparing jobs of different types.

The best retirement plan for a typical independent contractor emergency physician is an individual (solo) 401(k). In 2024, a full-time emergency physician under 50 should earn enough to max out the solo 401(k) with a $69,000 contribution. High savers may add a cash balance defined benefit plan to the solo 401(k). Solo 401(k)s can be opened for free at Fidelity or Schwab, but for a relatively low fee, a better, customized plan with more features and better service is available from smaller, boutique vendors.

Business owners, like an independent contractor emergency physician, can deduct their legitimate business expenses. “Writing off” these expenses does not mean you get them for free; it just means you are allowed to buy them with pre-tax dollars. This reduces the cost of things like CME, scrubs, and other business expenses by 25 to 45 percent. Items used partially for personal use are deductible only to the extent they are used in the business. If 10 percent of the use of your phone is for business, you can deduct 10 percent of its cost. While business mileage is deductible, your commute to the hospital from home is not generally business mileage.

It is important to keep your business affairs separate from your personal affairs. Thus, all business income and expenses should be run through a separate business bank account. A business credit card is probably a good idea too, although it is just as dumb to carry a balance on a high interest rate business card as a high interest rate personal card.

Many physicians prefer the control and often higher income available as an independent contractor. Truthfully, it is not all that different from being an employee, even if the initial transition can be intimidating. I will discuss this and other important subjects relevant to your business and personal finances at the ACEP24 in Las Vegas.


James M. Dahle, MD, FACEPDr. Dahle blogs at https://www.whitecoatinvestor.com and is a best-selling author and podcaster. He is not a licensed financial adviser, accountant, or attorney and recommends you consult with your own advisers prior to acting on any information you read here.

Pages: 1 2 3 | Multi-Page

Topics: careerCompensationRetirementTaxes

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3 Responses to “What To Know If You’re a 1099 Independent Contractor”

  1. October 26, 2024

    Garrett M. Reply

    Managing 1099s is tricky regardless of what side you find yourself: as the employer or contractor. The best advice that I was given is to find reliable software or an accountant that uses it: https://1099-etc.com/payroll-software/w2-and-1099-forms-filer/. Doing any books by hand is a mistake. Tax software like AMS also gives you insight into different liabilities without needing to do the research.

    • July 24, 2025

      Independent Contractor Reply

      Tried their free demo and I’m really glad that I did. We cut down our tax filing errors significantly and spend far less time reviewing every little detail for potential errors.

  2. April 1, 2025

    Leo D. Reply

    Looking into how can I get a contractors license, it’s clear that requirements differ by state. Some focus more on experience, while others emphasize exams and financial proof. Checking with the local licensing board is the best way to avoid delays

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